STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4299KEGG: rrs:RoseRS_1096 hypothetical protein. (662 aa)    
Predicted Functional Partners:
Haur_3007
KEGG: rca:Rcas_3121 hypothetical protein.
 
     0.701
Haur_4465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
 
     0.663
Haur_3155
KEGG: rca:Rcas_0707 hypothetical protein.
  
     0.610
Haur_3866
KEGG: rca:Rcas_0292 glycosyl transferase family 39.
  
     0.590
Haur_4713
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: dge:Dgeo_2174 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.575
Haur_0497
KEGG: rca:Rcas_3718 hypothetical protein.
  
     0.554
Haur_3184
KEGG: rca:Rcas_3881 hypothetical protein.
  
     0.536
Haur_0081
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_3973 PBS lyase heat domain protein repeat-containing protein.
  
    0.514
Haur_4691
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.503
Haur_0065
PFAM: O-antigen polymerase; KEGG: rca:Rcas_2722 O-antigen polymerase.
 
     0.500
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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