STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4340KEGG: tfu:Tfu_1922 solute-binding protein. (374 aa)    
Predicted Functional Partners:
Haur_4338
PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1920 putative ABC transporter transmembrane transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.981
Haur_4339
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV2246 putative ABC transporter ATP-binding protein.
 
 0.976
Haur_4681
KEGG: tfu:Tfu_1922 solute-binding protein.
  
  
 
0.903
Haur_3661
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bld:BLi00444 putative ABC transporter (permease); RBL00402; Belongs to the binding-protein-dependent transport system permease family.
  
 0.821
Haur_3660
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5657 sugar ABC transporter (ATP-binding protein).
  
 0.804
Haur_2204
Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: oan:Oant_2807 monosaccharide-transporting ATPase.
 
  
 0.607
xylA
KEGG: rrs:RoseRS_2884 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.427
xylA-2
KEGG: rrs:RoseRS_2884 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.419
Haur_2117
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.418
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.