STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4516KEGG: hha:Hhal_2262 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Haur_4515
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb1112 signal transduction histidine kinase.
       0.762
Haur_2301
PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like.
  
     0.485
Haur_4517
Hypothetical protein.
       0.466
Haur_4518
Hypothetical protein.
       0.460
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.