STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4820PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rrs:RoseRS_1853 NAD-dependent epimerase/dehydratase. (342 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 
0.933
Haur_1796
PFAM: sugar transferase; KEGG: rca:Rcas_1950 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.918
Haur_4228
PFAM: sugar transferase; KEGG: rca:Rcas_4266 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.918
Haur_3742
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_3655 NAD-dependent epimerase/dehydratase.
  
  
 
0.913
Haur_4821
PFAM: Nucleotidyl transferase; KEGG: ade:Adeh_0159 mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.806
Haur_4323
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mgm:Mmc1_2166 NAD-dependent epimerase/dehydratase.
 
 
 0.691
Haur_4822
PFAM: Nucleotidyl transferase; KEGG: rrs:RoseRS_1852 nucleotidyl transferase.
 
   
 0.686
Haur_4819
PFAM: NUDIX hydrolase; KEGG: rca:Rcas_1616 NUDIX hydrolase.
  
    0.608
Haur_0234
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2548 glycosyl transferase, group 1.
    0.550
Haur_3575
PFAM: sugar transferase; KEGG: rca:Rcas_3108 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.481
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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