STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4851TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_4519 cell envelope-related transcriptional attenuator. (432 aa)    
Predicted Functional Partners:
Haur_2665
PFAM: VanW family protein; KEGG: rca:Rcas_2379 VanW family protein.
 
     0.664
Haur_4059
PFAM: VanW family protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_2379 VanW family protein.
 
     0.625
Haur_2733
PFAM: VanW family protein; KEGG: rca:Rcas_0036 VanW family protein.
 
     0.624
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.622
Haur_4849
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: tko:TK0948 putative translation factor Sua5p homolog; Belongs to the SUA5 family.
       0.598
Haur_4850
KEGG: rca:Rcas_0296 hypothetical protein.
       0.598
Haur_3026
KEGG: rrs:RoseRS_2149 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
     0.558
Haur_1635
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: rca:Rcas_1691 competence protein ComEA helix-hairpin-helix repeat protein.
 
     0.544
Haur_0195
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: art:Arth_3208 hypothetical protein.
 
     0.538
Haur_4852
KEGG: rca:Rcas_3170 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.508
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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