STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbUSerine phosphatase RsbU, regulator of sigma subunit; Signal transduction mechanisms / Transcription. (457 aa)    
Predicted Functional Partners:
rsbW
Anti-sigma regulatory factor; Signal transduction mechanisms.
 
 
 0.980
spoIIAA
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Signal transduction mechanisms; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.963
argH
Argininosuccinate lyase; Amino acid transport and metabolism.
       0.790
CAK26912.1
Uncharacterized conserved membrane protein.
       0.661
nusB
Transcription termination factor, NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.661
ftsY
Signal recognition particle GTPase, FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.661
CAK28122.1
Conserved hypothetical protein.
   
    0.613
CAK26917.1
RNA-binding protein, RRM domain; General function prediction only.
       0.531
CAK26911.1
Uncharacterized conserved membrane protein.
       0.502
CAK26974.1
Conserved hypothetical protein.
  
  
 0.493
Your Current Organism:
Synechococcus sp. RCC307
NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.