STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAK27806.1HlyD family secretion protein. (332 aa)    
Predicted Functional Partners:
CAK27807.1
Permease of the major facilitator superfamily.
 
 
 0.931
CAK27300.1
Possible membrane-fusion protein; Cell envelope biogenesis, outer membrane; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.671
CAK27707.1
Outer membrane efflux protein.
 
 
 0.609
CAK28340.1
Possible membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.590
CAK27391.1
ABC-type multidrug transport system, ATPase and permease components.
  
 
 0.583
CAK27302.1
Defense mechanisms; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.581
CAK28339.1
Defense mechanisms; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.577
salY
ABC-type antimicrobial peptide transport system, permease component; Defense mechanisms.
 
  
 0.571
proP-2
Possible proline/betaine transporter, MFS superfamily.
  
 
 0.570
tolC
Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion.
  
 
 0.558
Your Current Organism:
Synechococcus sp. RCC307
NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.