Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAK28125.1 | CAK28600.1 | SynRCC307_1222 | SynRCC307_1697 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Maf-like protein (putative inhibitor of septum formation); Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.583 |
| CAK28125.1 | CAK28635.1 | SynRCC307_1222 | SynRCC307_1732 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Conserved hypothetical protein. | 0.663 |
| CAK28125.1 | apcD | SynRCC307_1222 | SynRCC307_1221 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Allophycocyanin alpha-B chain; Photosynthesis. | 0.571 |
| CAK28125.1 | clpP-2 | SynRCC307_1222 | SynRCC307_0595 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Protease subunit of ATP-dependent Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.445 |
| CAK28125.1 | guaA | SynRCC307_1222 | SynRCC307_0049 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.478 |
| CAK28125.1 | lrtA | SynRCC307_1222 | SynRCC307_1798 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.493 |
| CAK28125.1 | lysS | SynRCC307_1222 | SynRCC307_0114 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Lysyl-tRNA synthetase; Translation, ribosomal structure and biogenesis; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.467 |
| CAK28125.1 | rsmB | SynRCC307_1222 | SynRCC307_0574 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.514 |
| CAK28125.1 | rsmI | SynRCC307_1222 | SynRCC307_0541 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.461 |
| CAK28125.1 | trm1 | SynRCC307_1222 | SynRCC307_1690 | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Translation, ribosomal structure and biogenesis. | 0.466 |
| CAK28600.1 | CAK28125.1 | SynRCC307_1697 | SynRCC307_1222 | Maf-like protein (putative inhibitor of septum formation); Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.583 |
| CAK28635.1 | CAK28125.1 | SynRCC307_1732 | SynRCC307_1222 | Conserved hypothetical protein. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.663 |
| apcD | CAK28125.1 | SynRCC307_1221 | SynRCC307_1222 | Allophycocyanin alpha-B chain; Photosynthesis. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.571 |
| clpP-2 | CAK28125.1 | SynRCC307_0595 | SynRCC307_1222 | Protease subunit of ATP-dependent Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.445 |
| guaA | CAK28125.1 | SynRCC307_0049 | SynRCC307_1222 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.478 |
| guaA | lysS | SynRCC307_0049 | SynRCC307_0114 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Lysyl-tRNA synthetase; Translation, ribosomal structure and biogenesis; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.984 |
| lrtA | CAK28125.1 | SynRCC307_1798 | SynRCC307_1222 | Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.493 |
| lysS | CAK28125.1 | SynRCC307_0114 | SynRCC307_1222 | Lysyl-tRNA synthetase; Translation, ribosomal structure and biogenesis; Belongs to the class-II aminoacyl-tRNA synthetase family. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.467 |
| lysS | guaA | SynRCC307_0114 | SynRCC307_0049 | Lysyl-tRNA synthetase; Translation, ribosomal structure and biogenesis; Belongs to the class-II aminoacyl-tRNA synthetase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.984 |
| rsmB | CAK28125.1 | SynRCC307_0574 | SynRCC307_1222 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.514 |
page 1 of 2