STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpeAC-phycoerythrin class I alpha chain; Photosynthesis. (164 aa)    
Predicted Functional Partners:
cpeB
C-phycoerythrin class I beta chain; Photosynthesis.
 
 
 
 0.980
cpcG1
Phycobilisome rod-core linker polypeptide CpcG (L-RC 28.5); Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.931
apcE
Anchor polypeptide LCM; Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.919
apcC
Phycobilisome linker polypeptide, allophycocyanin-associated, core (LC 7.7); Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.918
aplA
Possible photoresponsive regulatory phycobiliprotein; orthologs in other marine Synechococcus spp. also located in phycobilisome rod gene region.
  
 
 
 0.906
mpeA
C-phycoerythrin class II alpha chain; Photosynthesis.
  
  
 
0.903
mpeF
Phycobilisome linker polypeptide, C-phycoerythrin class II-associated; Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.886
mpeE
Phycobilisome linker polypeptide, C-phycoerythrin class II-associated; Long gap in N-term region compared to WH8102; Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.886
cpeC
Phycobilisome linker polypeptide, C-phycoerythrin class I-associated; Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.886
mpeD
Phycobilisome linker polypeptide, C-phycoerythrin class I and II-associated; Photosynthesis; Belongs to the phycobilisome linker protein family.
  
 
 
 0.886
Your Current Organism:
Synechococcus sp. RCC307
NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1
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