STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAK29191.1DNA photolyase FAD binding domain. (330 aa)    
Predicted Functional Partners:
CAK29190.1
DNA photolyase light harvesting cofactor binding domain; IPR006050 Cryptochrome/photolyase, N-terminal domain.
     0.980
phr-2
Deoxyribodipyrimidine photolyase; DNA replication, recombination, and repair.
  
     0.768
CAK28106.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.602
fabI
Enoyl-[acyl-carrier-protein] reductase (NADH); Lipid metabolism.
       0.572
hisB
Imidazoleglycerol-phosphate dehydratase; Amino acid transport and metabolism.
       0.460
CAK29194.1
Conserved hypothetical protein.
       0.460
CAK29195.1
Lignostilbene-alpha, beta-dioxygenase; Secondary metabolites biosynthesis, transport, and catabolism.
       0.424
Your Current Organism:
Synechococcus sp. RCC307
NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1
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