Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ANZ17038.1 | ANZ17039.1 | SNOUR_18700 | SNOUR_18705 | NAD(FAD)-dependent dehydrogenase. | Ferredoxin. | 0.750 |
ANZ17038.1 | ANZ19065.1 | SNOUR_18700 | SNOUR_29100 | NAD(FAD)-dependent dehydrogenase. | Ribosomal methyltransferase Rsm22. | 0.682 |
ANZ17038.1 | rpsE | SNOUR_18700 | SNOUR_23335 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.706 |
ANZ17038.1 | rpsF | SNOUR_18700 | SNOUR_21090 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.702 |
ANZ17038.1 | rpsI | SNOUR_18700 | SNOUR_23415 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.705 |
ANZ17038.1 | rpsJ | SNOUR_18700 | SNOUR_23245 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.704 |
ANZ17038.1 | rpsO | SNOUR_18700 | SNOUR_13120 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.681 |
ANZ17038.1 | rpsP | SNOUR_18700 | SNOUR_13640 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.717 |
ANZ17038.1 | rspG | SNOUR_18700 | SNOUR_23230 | NAD(FAD)-dependent dehydrogenase. | 30S ribosomal protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.713 |
ANZ17038.1 | sodF1 | SNOUR_18700 | SNOUR_27165 | NAD(FAD)-dependent dehydrogenase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.703 |
ANZ17039.1 | ANZ17038.1 | SNOUR_18705 | SNOUR_18700 | Ferredoxin. | NAD(FAD)-dependent dehydrogenase. | 0.750 |
ANZ19065.1 | ANZ17038.1 | SNOUR_29100 | SNOUR_18700 | Ribosomal methyltransferase Rsm22. | NAD(FAD)-dependent dehydrogenase. | 0.682 |
ANZ19065.1 | rpsE | SNOUR_29100 | SNOUR_23335 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.984 |
ANZ19065.1 | rpsF | SNOUR_29100 | SNOUR_21090 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.983 |
ANZ19065.1 | rpsI | SNOUR_29100 | SNOUR_23415 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.983 |
ANZ19065.1 | rpsJ | SNOUR_29100 | SNOUR_23245 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.983 |
ANZ19065.1 | rpsO | SNOUR_29100 | SNOUR_13120 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.984 |
ANZ19065.1 | rpsP | SNOUR_29100 | SNOUR_13640 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.985 |
ANZ19065.1 | rspG | SNOUR_29100 | SNOUR_23230 | Ribosomal methyltransferase Rsm22. | 30S ribosomal protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.983 |
ANZ19065.1 | sodF1 | SNOUR_29100 | SNOUR_27165 | Ribosomal methyltransferase Rsm22. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.938 |
page 1 of 5