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ddpA protein (Escherichia coli K12 DH10B) - STRING interaction network
"ddpA" - D-alanine-D-alanine ABC transporter periplasmic-binding protein in Escherichia coli K12 DH10B
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpAD-alanine-D-alanine ABC transporter periplasmic-binding protein; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport (516 aa)    
Predicted Functional Partners:
ddpB
D-alanine-D-alanine ABC transporter membrane protein; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane (340 aa)
 
  0.998
ddpD
D-alanine-D-alanine ABC transporter ATP-binding protein; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for energy coupling to the transport system (328 aa)
 
 
  0.998
ddpF
D-alanine-D-alanine ABC transporter ATP-binding protein; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for energy coupling to the transport system (308 aa)
 
 
  0.997
ddpC
ATP-dependent peptide transporter membrane subunit; Part of the ABC transporter complex DdpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane (298 aa)
  0.985
dppC
Dipeptide transporter; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane (300 aa)
  0.940
dppB
Dipeptide transporter permease DppB; Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane (339 aa)
 
  0.935
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. May have a role in cell-wall turnover (193 aa)
 
        0.922
gsiC
Permease component of a glutathione transporter; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane (Probable) (306 aa)
 
  0.911
gsiD
Permease component of a glutathione transporter; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane (Probable) (303 aa)
  0.905
nikC
Nickel transporter permease NikC; Involved in a nickel transport system, probably translocates nickel through the bacterial inner membrane (277 aa)
  0.902
Your Current Organism:
Escherichia coli K12 DH10B
NCBI taxonomy Id: 316385
Other names: E. coli str. K-12 substr. DH10B, Escherichia coli DH10B, Escherichia coli K12 DH10B, Escherichia coli str. K-12 substr. DH10B, Escherichia coli str. K12 substr. DH10B, Escherichia coli strain K12 substrain DH10B
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