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ygaM protein (Escherichia coli K12 W3110) - STRING interaction network
"ygaM" - Hypothetical protein in Escherichia coli K12 W3110
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaMHypothetical protein (113 aa)    
Predicted Functional Partners:
elaB
Conserved hypothetical protein (101 aa)
   
 
  0.942
yqjE
Conserved inner membrane protein (134 aa)
 
        0.868
yqjK
Conserved hypothetical protein (99 aa)
 
        0.789
ygaC
Hypothetical protein (114 aa)
 
          0.781
ppdB
Conserved hypothetical protein; Not yet known (187 aa)
   
          0.773
yiaG
Predicted transcriptional regulator (96 aa)
   
   
  0.765
ydiZ
Hypothetical protein (96 aa)
   
        0.764
yidQ
Conserved outer membrane protein (110 aa)
   
        0.759
yjaH
Conserved hypothetical protein (231 aa)
   
          0.757
ylaC
Predicted inner membrane protein (156 aa)
   
          0.738
Your Current Organism:
Escherichia coli K12 W3110
NCBI taxonomy Id: 316407
Other names: E. coli str. K-12 substr. W3110, Escherichia coli K12 W3110, Escherichia coli W3110, Escherichia coli str. K-12 substr. W3110, Escherichia coli str. K12 substr. W3110, Escherichia coli str. W3110, Escherichia coli strain W3110
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