STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgaRannotation not available (228 aa)    
Predicted Functional Partners:
YgaQ
annotation not available
      0.938
YagJ
annotation not available
  
     0.769
RpmG
annotation not available
      
 0.768
YqaD
annotation not available
 
      0.744
YicR
annotation not available
      
 0.744
YghF
annotation not available
  
     0.697
MutM
annotation not available
      
 0.688
DinG
annotation not available
   
  
 0.680
UvrD
annotation not available
      
 0.678
UvrB
annotation not available
      
 0.674
Your Current Organism:
Escherichia coli K12 W3110
NCBI taxonomy Id: 316407
Other names: E. coli str. K-12 substr. W3110, Escherichia coli K12 substr. W3110, Escherichia coli W3110, Escherichia coli str. K-12 substr. W3110, Escherichia coli str. K12 substr. W3110, Escherichia coli str. W3110, Escherichia coli strain W3110
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