STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJG16827.1Hypothetical protein. (209 aa)    
Predicted Functional Partners:
OJG16826.1
Hypothetical protein.
       0.769
OJG16828.1
Membrane protein.
 
     0.733
OJG15866.1
ABC transporter membrane protein.
  
     0.705
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
    0.704
sigA
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.697
OJG14357.1
Hypothetical protein.
 
     0.691
OJG16275.1
Hypothetical protein.
  
     0.669
OJG14406.1
Type VI secretion protein.
 
   
 0.644
OJG15387.1
Hypothetical protein.
    
 0.639
OJG16139.1
Replication initiation protein.
 
     0.614
Your Current Organism:
Enterococcus canintestini
NCBI taxonomy Id: 317010
Other names: CCM 7285, CCUG 37857, CCUG 51312, DSM 21207, E. canintestini, Enterococcus canintestini Naser et al. 2005, Enterococcus sp. LMG 13590, LMG 13590, LMG:13590
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.