STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_0026KEGG: lic:LIC10134 hypothetical protein. (356 aa)    
Predicted Functional Partners:
Tcr_0027
PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: neu:NE1864 HAMP domain:bacterial chemotaxis sensory transducer.
 
     0.542
Tcr_1475
KEGG: cvi:CV1907 hypothetical protein.
  
     0.498
Tcr_1335
KEGG: vfi:VFA0174 hypothetical protein.
  
     0.489
Tcr_0724
KEGG: ilo:IL1814 hypothetical protein.
  
     0.434
Tcr_1438
TIGRFAM: flagellar export protein FliJ; KEGG: ilo:IL1196 flagellar biosynthesis chaperone.
  
     0.422
Tcr_1611
Hypothetical protein.
  
     0.416
Tcr_1696
Ubiquinone/menaquinone biosynthesis methyltransferase; KEGG: syc:syc0147_c membrane-associated protein.
  
     0.408
Tcr_1651
KEGG: eba:ebD23 hypothetical protein.
  
     0.405
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.