Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tcr_0070 | Tcr_0497 | Tcr_0070 | Tcr_0497 | long-chain-fatty-acid-CoA ligase of the AMP binding family; PFAM: AMP-dependent synthetase and ligase phospholipid/glycerol acyltransferase; KEGG: bja:bll2324 long-chain-fatty-acid--[acyl-carrier-protein] ligase / acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase. | Hypothetical protein. | 0.419 |
Tcr_0070 | Tcr_0592 | Tcr_0070 | Tcr_0592 | long-chain-fatty-acid-CoA ligase of the AMP binding family; PFAM: AMP-dependent synthetase and ligase phospholipid/glycerol acyltransferase; KEGG: bja:bll2324 long-chain-fatty-acid--[acyl-carrier-protein] ligase / acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase. | MutT/NUDIX family protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase thiamine monophosphate synthase; KEGG: pst:PSPTO4397 mutT/nudix family protein / thiamine phosphate synthase. | 0.554 |
Tcr_0070 | Tcr_1349 | Tcr_0070 | Tcr_1349 | long-chain-fatty-acid-CoA ligase of the AMP binding family; PFAM: AMP-dependent synthetase and ligase phospholipid/glycerol acyltransferase; KEGG: bja:bll2324 long-chain-fatty-acid--[acyl-carrier-protein] ligase / acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase. | Aminomethyltransferase; PFAM: glucose-inhibited division protein A HI0933-like protein glycine cleavage T protein (aminomethyl transferase); KEGG: pst:PSPTO2450 sarcosine oxidase, alpha subunit; Belongs to the GcvT family. | 0.579 |
Tcr_0494 | Tcr_0497 | Tcr_0494 | Tcr_0497 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sfx:S0024 putative regulator. | Hypothetical protein. | 0.555 |
Tcr_0494 | ileS | Tcr_0494 | Tcr_0495 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sfx:S0024 putative regulator. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.737 |
Tcr_0494 | lspA | Tcr_0494 | Tcr_0496 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sfx:S0024 putative regulator. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.749 |
Tcr_0497 | Tcr_0070 | Tcr_0497 | Tcr_0070 | Hypothetical protein. | long-chain-fatty-acid-CoA ligase of the AMP binding family; PFAM: AMP-dependent synthetase and ligase phospholipid/glycerol acyltransferase; KEGG: bja:bll2324 long-chain-fatty-acid--[acyl-carrier-protein] ligase / acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase. | 0.419 |
Tcr_0497 | Tcr_0494 | Tcr_0497 | Tcr_0494 | Hypothetical protein. | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sfx:S0024 putative regulator. | 0.555 |
Tcr_0497 | Tcr_0592 | Tcr_0497 | Tcr_0592 | Hypothetical protein. | MutT/NUDIX family protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase thiamine monophosphate synthase; KEGG: pst:PSPTO4397 mutT/nudix family protein / thiamine phosphate synthase. | 0.415 |
Tcr_0497 | Tcr_1348 | Tcr_0497 | Tcr_1348 | Hypothetical protein. | Hypothetical protein. | 0.498 |
Tcr_0497 | Tcr_1349 | Tcr_0497 | Tcr_1349 | Hypothetical protein. | Aminomethyltransferase; PFAM: glucose-inhibited division protein A HI0933-like protein glycine cleavage T protein (aminomethyl transferase); KEGG: pst:PSPTO2450 sarcosine oxidase, alpha subunit; Belongs to the GcvT family. | 0.616 |
Tcr_0497 | Tcr_1350 | Tcr_0497 | Tcr_1350 | Hypothetical protein. | KEGG: aci:ACIAD2551 sarcosine oxidase subunit D. | 0.661 |
Tcr_0497 | Tcr_1359 | Tcr_0497 | Tcr_1359 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.454 |
Tcr_0497 | ileS | Tcr_0497 | Tcr_0495 | Hypothetical protein. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.658 |
Tcr_0497 | lspA | Tcr_0497 | Tcr_0496 | Hypothetical protein. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.784 |
Tcr_0592 | Tcr_0070 | Tcr_0592 | Tcr_0070 | MutT/NUDIX family protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase thiamine monophosphate synthase; KEGG: pst:PSPTO4397 mutT/nudix family protein / thiamine phosphate synthase. | long-chain-fatty-acid-CoA ligase of the AMP binding family; PFAM: AMP-dependent synthetase and ligase phospholipid/glycerol acyltransferase; KEGG: bja:bll2324 long-chain-fatty-acid--[acyl-carrier-protein] ligase / acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase. | 0.554 |
Tcr_0592 | Tcr_0497 | Tcr_0592 | Tcr_0497 | MutT/NUDIX family protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase thiamine monophosphate synthase; KEGG: pst:PSPTO4397 mutT/nudix family protein / thiamine phosphate synthase. | Hypothetical protein. | 0.415 |
Tcr_0592 | Tcr_1349 | Tcr_0592 | Tcr_1349 | MutT/NUDIX family protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase thiamine monophosphate synthase; KEGG: pst:PSPTO4397 mutT/nudix family protein / thiamine phosphate synthase. | Aminomethyltransferase; PFAM: glucose-inhibited division protein A HI0933-like protein glycine cleavage T protein (aminomethyl transferase); KEGG: pst:PSPTO2450 sarcosine oxidase, alpha subunit; Belongs to the GcvT family. | 0.529 |
Tcr_1348 | Tcr_0497 | Tcr_1348 | Tcr_0497 | Hypothetical protein. | Hypothetical protein. | 0.498 |
Tcr_1348 | Tcr_1349 | Tcr_1348 | Tcr_1349 | Hypothetical protein. | Aminomethyltransferase; PFAM: glucose-inhibited division protein A HI0933-like protein glycine cleavage T protein (aminomethyl transferase); KEGG: pst:PSPTO2450 sarcosine oxidase, alpha subunit; Belongs to the GcvT family. | 0.979 |
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