STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_0606PFAM: SirA-like; Belongs to the sulfur carrier protein TusA family. (77 aa)    
Predicted Functional Partners:
Tcr_0353
PFAM: SirA-like; KEGG: sac:SACOL0063 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
     
  0.900
Tcr_0605
PFAM: peptidase M48, Ste24p; KEGG: son:SO2869 hypothetical protein.
       0.574
Tcr_0607
UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU.
       0.515
Tcr_0170
KEGG: dra:DRA0163 hypothetical protein.
  
  
 0.478
Tcr_0171
Conserved hypothetical protein; PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bja:blr3523 hypothetical protein.
  
  
 0.478
Tcr_0419
YeeE/YedE family protein; PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: oih:OB3144 hypothetical protein.
  
  
 0.478
Tcr_0964
KEGG: cte:CT0861 hypothetical protein.
  
  
 0.473
thiI
Thiamine biosynthesis protein thiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
  
 0.461
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: aci:ACIAD0101 glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.412
Tcr_0609
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: mca:MCA2487 UDP-glucose 6-dehydrogenase.
       0.412
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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