STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_1237KEGG: bcl:ABC3955 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Tcr_1236
Drug/metabolite (DMT) superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: mca:MCA2967 hypothetical protein.
       0.671
Tcr_1235
Asparaginase; KEGG: xac:XAC0932 asparaginase.
       0.485
Tcr_1234
S24 family peptidase; Represses a number of genes involved in the response to DNA damage (SOS response).
       0.405
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.