STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_1417Hypothetical protein; KEGG: gsu:GSU2939 outer membrane porin FmdC, putative. (367 aa)    
Predicted Functional Partners:
Tcr_1414
Tripartite ATP-independent periplasmic (TRAP-T) transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter.
       0.685
Tcr_1415
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: wsu:WS0371 hypothetical protein.
       0.685
Tcr_1413
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; PFAM: gamma-glutamyltranspeptidase; KEGG: eca:ECA3497 putative gamma-glutamyltranspeptidase.
       0.665
Tcr_1416
Tripartite ATP-independent periplasmic (TRAP-T) transporter, DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.664
Tcr_1412
PFAM: protein of unknown function DUF81; KEGG: atc:AGR_C_3499 hypothetical protein.
       0.642
Tcr_0230
KEGG: mca:MCA2826 hypothetical protein.
  
     0.446
Tcr_1368
Monovalent cation: proton antiporter-2 (CPA2) family transporter; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: bps:BPSL0539 sodium/hydrogen exchanger family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
    0.431
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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