STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_1566PFAM: protein of unknown function DUF461; KEGG: vfi:VFA0818 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Tcr_1565
PFAM: electron transport protein SCO1/SenC; KEGG: rco:RC0895 sco2 protein precursor.
 
   
 0.949
Tcr_0991
Ubiquinol:cytochrome c reductase (bc1 complex) iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.886
Tcr_0992
Ubiquinol:cytochrome c reductase (bc1 complex) cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.861
Tcr_1963
Cbb3-type cytochrome oxidase CcoP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.800
Tcr_1575
PFAM: cytochrome c, class I; KEGG: neu:NE1493 cytochrome c, class IC:cytochrome c, class I.
 
 
 0.749
Tcr_1564
PFAM: TonB-dependent receptor; KEGG: ppu:PP4838 outer membrane copper receptor OprC.
 
    0.738
Tcr_2114
PFAM: cytochrome c, class I; KEGG: neu:NE1493 cytochrome c, class IC:cytochrome c, class I.
  
 
 0.720
Tcr_0604
Monoheme cytochrome SoxX (sulfur oxidation); PFAM: cytochrome c, class I; KEGG: cte:CT1016 sulfur oxidation protein SoxX.
  
 
 0.716
Tcr_0157
Sulfur oxidation system protein SoxD; KEGG: rpa:RPA4463 possible cytochrome.
   
 
 0.679
Tcr_1266
Hypothetical protein.
   
 
 0.679
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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