STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_1911PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator. (268 aa)    
Predicted Functional Partners:
Tcr_1021
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO0796 GGDEF family protein.
 
    0.943
Tcr_1913
KEGG: mac:MA2013 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAC motif.
 
 
 0.880
Tcr_0457
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpa:RPA2476 putative diguanylate cyclase (GGDEF).
 
    0.870
Tcr_0379
Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein; KEGG: eba:ebA864 hypothetical protein.
 
 0.820
Tcr_0090
Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; KEGG: pst:PSPTO1346 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: PAS domain containing protein+B6621 conserved hypothetical protein; SMART: PAC motif.
 
 0.810
Tcr_0166
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: gsu:GSU1037 sensory box/response regulator.
 
 0.786
Tcr_1912
Hypothetical protein.
       0.773
Tcr_1383
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt; KEGG: bba:Bd3528 signal transduction histidine kinase.
 
 0.770
Tcr_0109
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mca:MCA0842 GGDEF domain protein.
 
    0.762
Tcr_1920
Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; KEGG: wsu:WS0850 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein extracellular solute-binding protein, family 3; SMART: PAC motif.
 
 0.739
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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