Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_2011Tripartite ATP-independent periplasmic (TRAP-T) transporter, dctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (366 aa)    
Predicted Functional Partners:
Tcr_2006
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ppr:PBPRA1403 hypothetical permease protein.
 
 
 0.978
Tcr_2007
Tripartite ATP-independent periplasmic (TRAP-T) transporter, dctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter.
 
 
 0.978
Tcr_1416
Tripartite ATP-independent periplasmic (TRAP-T) transporter, DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.907
Tcr_1414
Tripartite ATP-independent periplasmic (TRAP-T) transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter.
 
  
 0.797
Tcr_1415
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: wsu:WS0371 hypothetical protein.
 
  
 0.791
Tcr_2012
KEGG: vfi:VFA0727 hypothetical cytosolic protein.
       0.517
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.