Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DFI_02285 | DFI_02445 | GCA_000419625_00685 | GCA_000419625_00654 | Dihydrolipoyl dehydrogenase. | Dihydrolipoyl dehydrogenase. | 0.911 |
DFI_02285 | DFI_17740 | GCA_000419625_00685 | GCA_000419625_03283 | Dihydrolipoyl dehydrogenase. | Thioredoxin domain-containing protein. | 0.677 |
DFI_02445 | DFI_02285 | GCA_000419625_00654 | GCA_000419625_00685 | Dihydrolipoyl dehydrogenase. | Dihydrolipoyl dehydrogenase. | 0.911 |
DFI_02445 | DFI_17740 | GCA_000419625_00654 | GCA_000419625_03283 | Dihydrolipoyl dehydrogenase. | Thioredoxin domain-containing protein. | 0.677 |
DFI_03990 | DFI_17740 | GCA_000419625_00341 | GCA_000419625_03283 | Cytochrome C biogenesis protein CcdA. | Thioredoxin domain-containing protein. | 0.616 |
DFI_03990 | GCA_000419625_03027 | GCA_000419625_00341 | GCA_000419625_03027 | Cytochrome C biogenesis protein CcdA. | annotation not available | 0.673 |
DFI_11215 | DFI_17740 | GCA_000419625_01683 | GCA_000419625_03283 | Peroxiredoxin. | Thioredoxin domain-containing protein. | 0.770 |
DFI_13290 | DFI_17740 | GCA_000419625_01267 | GCA_000419625_03283 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Thioredoxin domain-containing protein. | 0.606 |
DFI_17735 | DFI_17740 | GCA_000419625_03282 | GCA_000419625_03283 | Uncharacterized protein. | Thioredoxin domain-containing protein. | 0.664 |
DFI_17735 | gabD | GCA_000419625_03282 | GCA_000419625_03284 | Uncharacterized protein. | NAD-dependent succinate-semialdehyde dehydrogenase. | 0.565 |
DFI_17740 | DFI_02285 | GCA_000419625_03283 | GCA_000419625_00685 | Thioredoxin domain-containing protein. | Dihydrolipoyl dehydrogenase. | 0.677 |
DFI_17740 | DFI_02445 | GCA_000419625_03283 | GCA_000419625_00654 | Thioredoxin domain-containing protein. | Dihydrolipoyl dehydrogenase. | 0.677 |
DFI_17740 | DFI_03990 | GCA_000419625_03283 | GCA_000419625_00341 | Thioredoxin domain-containing protein. | Cytochrome C biogenesis protein CcdA. | 0.616 |
DFI_17740 | DFI_11215 | GCA_000419625_03283 | GCA_000419625_01683 | Thioredoxin domain-containing protein. | Peroxiredoxin. | 0.770 |
DFI_17740 | DFI_13290 | GCA_000419625_03283 | GCA_000419625_01267 | Thioredoxin domain-containing protein. | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.606 |
DFI_17740 | DFI_17735 | GCA_000419625_03283 | GCA_000419625_03282 | Thioredoxin domain-containing protein. | Uncharacterized protein. | 0.664 |
DFI_17740 | DFI_17915 | GCA_000419625_03283 | GCA_000419625_03314 | Thioredoxin domain-containing protein. | Mercuric reductase. | 0.677 |
DFI_17740 | GCA_000419625_03027 | GCA_000419625_03283 | GCA_000419625_03027 | Thioredoxin domain-containing protein. | annotation not available | 0.757 |
DFI_17740 | gabD | GCA_000419625_03283 | GCA_000419625_03284 | Thioredoxin domain-containing protein. | NAD-dependent succinate-semialdehyde dehydrogenase. | 0.674 |
DFI_17740 | msrA | GCA_000419625_03283 | GCA_000419625_02579 | Thioredoxin domain-containing protein. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.759 |
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