Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000332315_01010 | GCA_000332315_03204 | GCA_000332315_01010 | GCA_000332315_03204 | Unannotated protein. | Unannotated protein. | 0.563 |
GCA_000332315_01010 | PROH_17865 | GCA_000332315_01010 | GCA_000332315_01707 | Unannotated protein. | Unannotated protein; Belongs to the UbiD family. | 0.535 |
GCA_000332315_01010 | PROH_18025 | GCA_000332315_01010 | GCA_000332315_01739 | Unannotated protein. | Unannotated protein. | 0.861 |
GCA_000332315_01010 | PROH_18255 | GCA_000332315_01010 | GCA_000332315_02539 | Unannotated protein. | Unannotated protein. | 0.824 |
GCA_000332315_01010 | PROH_18875 | GCA_000332315_01010 | GCA_000332315_02773 | Unannotated protein. | Unannotated protein; Belongs to the FPP/GGPP synthase family. | 0.660 |
GCA_000332315_01010 | PROH_21095 | GCA_000332315_01010 | GCA_000332315_03089 | Unannotated protein. | Unannotated protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.802 |
GCA_000332315_01010 | ubiA | GCA_000332315_01010 | GCA_000332315_01774 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family. | 0.663 |
GCA_000332315_01010 | ubiX | GCA_000332315_01010 | GCA_000332315_01523 | Unannotated protein. | Unannotated protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.733 |
GCA_000332315_03204 | GCA_000332315_01010 | GCA_000332315_03204 | GCA_000332315_01010 | Unannotated protein. | Unannotated protein. | 0.563 |
GCA_000332315_03204 | ubiA | GCA_000332315_03204 | GCA_000332315_01774 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family. | 0.770 |
PROH_17865 | GCA_000332315_01010 | GCA_000332315_01707 | GCA_000332315_01010 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein. | 0.535 |
PROH_17865 | ubiA | GCA_000332315_01707 | GCA_000332315_01774 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family. | 0.893 |
PROH_17865 | ubiX | GCA_000332315_01707 | GCA_000332315_01523 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.981 |
PROH_18025 | GCA_000332315_01010 | GCA_000332315_01739 | GCA_000332315_01010 | Unannotated protein. | Unannotated protein. | 0.861 |
PROH_18025 | PROH_18875 | GCA_000332315_01739 | GCA_000332315_02773 | Unannotated protein. | Unannotated protein; Belongs to the FPP/GGPP synthase family. | 0.755 |
PROH_18025 | PROH_21095 | GCA_000332315_01739 | GCA_000332315_03089 | Unannotated protein. | Unannotated protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.831 |
PROH_18025 | chlB | GCA_000332315_01739 | GCA_000332315_03051 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.848 |
PROH_18025 | chlN | GCA_000332315_01739 | GCA_000332315_01766 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.825 |
PROH_18025 | ubiA | GCA_000332315_01739 | GCA_000332315_01774 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family. | 0.695 |
PROH_18255 | GCA_000332315_01010 | GCA_000332315_02539 | GCA_000332315_01010 | Unannotated protein. | Unannotated protein. | 0.824 |
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