STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_0937Patatin. (385 aa)    
Predicted Functional Partners:
Sala_0938
3-hydroxybutyrate dehydrogenase.
 
     0.761
Sala_1971
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
      0.630
Sala_0936
Protein of unknown function, zinc metallopeptidase putative.
       0.611
Sala_0939
Conserved hypothetical protein.
 
     0.578
Sala_0940
Peptidase M20D, amidohydrolase.
       0.567
Sala_1396
PRC-barrel.
  
     0.524
Sala_0505
Poly(R)-hydroxyalkanoic acid synthase, class I.
 
   
 0.519
Sala_1984
Polyhydroxyalkanoate depolymerase, intracellular.
  
     0.400
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.