Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Sala_1007AMP-dependent synthetase and ligase. (571 aa)    
Predicted Functional Partners:
Sala_1008
Carotenoid oxygenase.
 
 
   0.845
Sala_1009
2-nitropropane dioxygenase, NPD.
  
    0.780
Sala_1006
Thiolase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.671
Sala_1005
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.556
Sala_1010
TonB-dependent receptor.
       0.553
Sala_1011
Transcriptional regulator, HxlR family.
 
     0.506
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.488
Sala_2445
Hypothetical protein.
    
 0.452
Sala_0714
Conserved hypothetical protein.
  
 
 0.415
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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