STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_1240acyl-CoA dehydrogenase-like protein. (640 aa)    
Predicted Functional Partners:
Sala_1241
acyl-CoA dehydrogenase-like protein.
     0.930
Sala_3068
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.824
Sala_0855
acyl-CoA dehydrogenase-like protein.
 
     0.765
Sala_1247
acyl-CoA dehydrogenase-like protein.
 
     0.764
Sala_1635
acyl-CoA dehydrogenase-like protein.
 
     0.757
Sala_0874
acyl-CoA dehydrogenase-like protein.
 
     0.669
Sala_0682
AMP-dependent synthetase and ligase.
  
 0.632
Sala_0221
AMP-dependent synthetase and ligase.
 
 
  0.622
Sala_0900
Conserved hypothetical protein.
 
   0.622
Sala_0912
AMP-dependent synthetase and ligase.
 
 
  0.612
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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