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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_1663Glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family. (681 aa)    
Predicted Functional Partners:
Sala_1661
Aldo/keto reductase.
 
   
 0.909
Sala_1662
Transcriptional regulator, LacI family.
 
   
 0.837
Sala_2096
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 
 0.746
Sala_0715
Monooxygenase, flavin-binding family.
    
   0.726
Sala_1664
TonB-dependent receptor.
 
   
 0.726
Sala_1017
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.659
Sala_1660
Alkanesulfonate monooxygenase.
 
   
 0.638
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.634
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
   0.626
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
   0.616
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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