Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Sala_1663Glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family. (681 aa)    
Predicted Functional Partners:
Sala_1661
Aldo/keto reductase.
 
   
 0.896
Sala_1662
Transcriptional regulator, LacI family.
 
   
 0.838
rpsG
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.740
Sala_1664
TonB-dependent receptor.
 
   
 0.729
Sala_2096
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 
 0.725
Sala_0044
Type I phosphodiesterase/nucleotide pyrophosphatase; Alkaline phosphatase with broad substrate specificity.
   
  0.701
Sala_1660
Alkanesulfonate monooxygenase.
 
   
 0.633
Sala_1017
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.617
Sala_0304
Beta-phosphoglucomutase.
 
  
 0.598
Sala_0921
Major facilitator superfamily MFS_1.
 
  
 0.558
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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