STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_1922Conserved hypothetical protein. (355 aa)    
Predicted Functional Partners:
Sala_1923
Polysaccharide deacetylase.
 
     0.955
Sala_1924
Conserved hypothetical protein.
 
     0.924
Sala_1921
Glycosyl transferase, group 1.
 
    0.918
Sala_1927
Lipopolysaccharide biosynthesis.
 
     0.914
Sala_1926
Protein-tyrosine kinase.
 
     0.913
Sala_1920
ABC transporter related.
 
     0.894
Sala_1928
Polysaccharide export protein.
 
     0.893
Sala_1919
Asparagine synthase, glutamine-hydrolyzing.
 
     0.881
Sala_1932
Conserved hypothetical protein.
 
     0.822
Sala_1934
Alpha/beta hydrolase fold.
 
     0.807
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.