Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sala_1925Hypothetical protein. (568 aa)    
Predicted Functional Partners:
Sala_1926
Protein-tyrosine kinase.
     
 0.857
Sala_1927
Lipopolysaccharide biosynthesis.
     
 0.841
Sala_1924
Conserved hypothetical protein.
       0.814
Sala_1928
Polysaccharide export protein.
       0.746
Sala_1923
Polysaccharide deacetylase.
       0.733
Sala_1922
Conserved hypothetical protein.
       0.655
Sala_1919
Asparagine synthase, glutamine-hydrolyzing.
       0.606
Sala_1920
ABC transporter related.
       0.606
Sala_1921
Glycosyl transferase, group 1.
       0.606
Sala_1929
Orn/DAP/Arg decarboxylase 2.
       0.598
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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