STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2002Phage portal protein, HK97. (368 aa)    
Predicted Functional Partners:
Sala_1999
Phage major capsid protein, HK97.
 
 
 0.970
Sala_2000
Prohead peptidase. Unknown type peptidase. MEROPS family U35.
 
   
 0.936
Sala_1995
Phage major tail protein, TP901-1.
 
 
 0.932
Sala_1991
Phage conserved hypothetical protein BR0599.
 
   0.920
Sala_1992
Conserved hypothetical protein.
 
 
   0.919
Sala_1990
Hypothetical protein.
 
 
   0.916
Sala_2004
Protein of unknown function DUF264.
 
  
 0.897
Sala_1989
Hypothetical protein.
 
 
 0.841
Sala_1565
Hypothetical protein.
  
 
 0.828
Sala_2001
Hypothetical protein.
 
     0.819
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.