Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2002Phage portal protein, HK97. (368 aa)    
Predicted Functional Partners:
Sala_1999
Phage major capsid protein, HK97.
 
 
 0.975
Sala_1995
Phage major tail protein, TP901-1.
 
 
 0.947
Sala_1991
Phage conserved hypothetical protein BR0599.
 
   0.940
Sala_2000
Prohead peptidase. Unknown type peptidase. MEROPS family U35.
 
   
 0.939
Sala_1990
Hypothetical protein.
 
 
   0.937
Sala_1992
Conserved hypothetical protein.
 
 
   0.937
Sala_2004
Protein of unknown function DUF264.
 
  
 0.912
Sala_1989
Hypothetical protein.
 
 
 
 0.850
Sala_2001
Hypothetical protein.
 
     0.815
Sala_1565
Hypothetical protein.
  
 
 0.783
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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