STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2125Conserved hypothetical protein. (149 aa)    
Predicted Functional Partners:
Sala_2123
3-oxoacid CoA-transferase, subunit A.
       0.779
Sala_2124
butyryl-CoA:acetate CoA transferase.
       0.778
Sala_2126
NAD-dependent epimerase/dehydratase.
       0.623
Sala_2127
Glutathione S-transferase-like protein.
       0.623
Sala_2122
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.548
Sala_0027
TonB-dependent receptor.
  
     0.400
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.