Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2425Copper resistance protein CopC. (127 aa)    
Predicted Functional Partners:
Sala_2426
Copper resistance D.
 
  
 0.963
Sala_2057
DUF461.
  
  
 0.849
Sala_2427
Transcriptional regulator, AraC family.
 
     0.721
Sala_0714
Conserved hypothetical protein.
  
     0.664
Sala_0323
General secretion pathway L.
  
     0.654
Sala_2243
Sphingosine kinase; Similar to enzymes related to diacylglycerol kinase.
  
     0.643
Sala_0028
PepSY-associated TM helix.
 
    0.607
Sala_2409
PepSY-associated TM helix.
 
    0.580
Sala_2410
Uncharacterized conserved secreted or membrane protein.
 
    0.568
Sala_0010
Hypothetical protein.
  
     0.560
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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