STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2759Type I secretion membrane fusion protein, HlyD. (421 aa)    
Predicted Functional Partners:
Sala_2758
Periplasmic protein-like protein.
 
  
 0.776
Sala_2760
Hypothetical protein.
     
 0.774
Sala_2583
Type I secretion outer membrane protein, TolC.
 
 
 0.637
Sala_2262
Type I secretion outer membrane protein, TolC.
  
 
 0.574
Sala_2762
Type II secretion system protein.
  
    0.574
Sala_2763
Type II secretion system protein.
  
    0.568
Sala_2764
Tetratricopeptide TPR_2.
  
    0.567
Sala_2761
Type II secretion system protein E.
  
    0.558
Sala_2765
Tetratricopeptide TPR_2.
     
 0.539
Sala_2766
Peptidase A24A, prepilin type IV.
       0.538
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.