STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_2882TonB-dependent receptor. (786 aa)    
Predicted Functional Partners:
Sala_1455
TonB-dependent receptor, plug.
 
  
 0.792
Sala_3108
TonB-dependent receptor.
 
   
 0.742
Sala_2411
TonB-dependent receptor.
 
  
 0.675
Sala_3041
TonB-dependent receptor.
 
  
 0.649
Sala_2600
TonB-dependent receptor.
 
  
 0.638
Sala_2744
Putative outer membrane protein with a TonB box.
 
  
 0.592
Sala_1894
TonB-dependent receptor.
  
   
 0.576
Sala_1228
TonB-dependent receptor.
 
   
 0.569
Sala_2599
Putative FecR.
 
  
 0.562
Sala_2291
Methyltransferase type 11.
  
     0.544
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.