STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_31243-phytase. (342 aa)    
Predicted Functional Partners:
Sala_2209
Glycerophosphoryl diester phosphodiesterase.
 
   
 0.610
Sala_0741
TonB-dependent receptor.
 
     0.605
Sala_3041
TonB-dependent receptor.
 
     0.596
Sala_3125
TonB-dependent receptor.
 
     0.588
Sala_3040
Pectate lyase.
  
     0.536
purH
Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase.
       0.524
Sala_3126
Hypothetical protein.
       0.491
Sala_1625
Twin-arginine translocation pathway signal.
 
   
 0.461
Sala_0313
TonB-dependent receptor.
 
     0.433
Sala_1739
CheW protein.
  
   
 0.402
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.