STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_0662Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
Sden_1904
Conserved hypothetical protein.
  
     0.759
Sden_2694
Conserved hypothetical protein.
  
     0.746
Sden_2467
Conserved hypothetical protein.
  
     0.733
Sden_1517
Conserved hypothetical protein.
  
     0.728
Sden_1824
Hypothetical protein.
  
     0.727
Sden_2559
Conserved hypothetical protein.
  
     0.720
Sden_2420
Tetratricopeptide region.
  
     0.719
Sden_2332
2OG-Fe(II) oxygenase.
  
     0.712
Sden_1519
GCN5-related N-acetyltransferase.
  
     0.708
Sden_3194
Conserved hypothetical protein.
  
     0.689
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.