STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_0760Endonuclease/exonuclease/phosphatase. (379 aa)    
Predicted Functional Partners:
Sden_3452
Aminotransferase, class V.
  
 
   0.769
Sden_0742
Conserved hypothetical protein.
  
     0.762
Sden_0753
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.721
Sden_2142
Conserved hypothetical protein.
  
     0.662
Sden_1515
Conserved hypothetical protein.
  
     0.642
Sden_2229
Porin, Gram-negative type.
  
    0.624
Sden_0906
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
 
     0.623
Sden_1282
Conserved hypothetical protein.
  
     0.619
Sden_1445
TonB-dependent receptor, plug.
  
     0.593
Sden_2824
Major outer membrane lipoprotein, putative.
  
     0.582
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.