Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sden_0803Hypothetical protein. (347 aa)    
Predicted Functional Partners:
Sden_3532
Amino acid adenylation.
  
 
 0.869
Sden_3733
Amino acid adenylation.
  
 
 0.746
Sden_2919
Transcriptional regulatory protein-like protein.
 
   0.663
Sden_0944
Transcriptional regulatory protein-like protein.
  
     0.658
Sden_3280
Conserved hypothetical protein.
  
     0.626
Sden_2890
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.605
Sden_0455
Conserved hypothetical protein.
  
     0.598
Sden_0007
Na-Ca exchanger/integrin-beta4.
  
     0.581
Sden_0806
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.576
Sden_0566
Hypothetical protein.
  
     0.572
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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