Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Sden_0804Peptidase A1, pepsin. (429 aa)    
Predicted Functional Partners:
Sden_0805
GCN5-related N-acetyltransferase.
 
     0.919
Sden_0806
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.891
Sden_3290
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.764
Sden_0949
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.737
Sden_1243
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.712
Sden_0438
WD40-like beta Propeller.
  
     0.709
Sden_0434
TonB-like protein.
  
     0.644
Sden_1186
Transciptional regulator.
  
     0.612
Sden_3721
Transciptional regulator.
  
     0.610
Sden_0807
Hypothetical protein.
       0.608
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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