Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_0806Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. (286 aa)    
Predicted Functional Partners:
Sden_0804
Peptidase A1, pepsin.
 
     0.891
Sden_0807
Hypothetical protein.
       0.773
Sden_0805
GCN5-related N-acetyltransferase.
 
     0.695
Sden_3290
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.654
Sden_2332
2OG-Fe(II) oxygenase.
  
     0.594
Sden_0803
Hypothetical protein.
 
     0.576
Sden_0772
Conserved hypothetical protein.
  
     0.559
Sden_2694
Conserved hypothetical protein.
  
     0.529
Sden_0119
RNA-binding S4; Belongs to the HSP15 family.
  
    0.527
Sden_3441
Protein of unknown function DUF1212.
 
     0.515
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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