Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_1245 | Sden_1665 | Sden_1245 | Sden_1665 | Malate synthase A. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.658 |
Sden_1245 | Sden_1912 | Sden_1245 | Sden_1912 | Malate synthase A. | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.932 |
Sden_1245 | Sden_2189 | Sden_1245 | Sden_2189 | Malate synthase A. | Citrate synthase; Belongs to the citrate synthase family. | 0.964 |
Sden_1245 | Sden_3353 | Sden_1245 | Sden_3353 | Malate synthase A. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+). | 0.922 |
Sden_1245 | fumC | Sden_1245 | Sden_1650 | Malate synthase A. | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.917 |
Sden_1245 | maeA | Sden_1245 | Sden_0736 | Malate synthase A. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Belongs to the malic enzymes family. | 0.922 |
Sden_1245 | mdh | Sden_1245 | Sden_0826 | Malate synthase A. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. | 0.933 |
Sden_1245 | pckA | Sden_1245 | Sden_0117 | Malate synthase A. | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.845 |
Sden_1245 | ppc | Sden_1245 | Sden_0248 | Malate synthase A. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. | 0.831 |
Sden_1665 | Sden_1245 | Sden_1665 | Sden_1245 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Malate synthase A. | 0.658 |
Sden_1665 | Sden_1912 | Sden_1665 | Sden_1912 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.892 |
Sden_1665 | Sden_3353 | Sden_1665 | Sden_3353 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+). | 0.622 |
Sden_1665 | fumC | Sden_1665 | Sden_1650 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.648 |
Sden_1665 | mdh | Sden_1665 | Sden_0826 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. | 0.979 |
Sden_1665 | ppc | Sden_1665 | Sden_0248 | 2-methylcitrate synthase; Belongs to the citrate synthase family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. | 0.578 |
Sden_1750 | Sden_1912 | Sden_1750 | Sden_1912 | Aminotransferase. | Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.825 |
Sden_1750 | Sden_2189 | Sden_1750 | Sden_2189 | Aminotransferase. | Citrate synthase; Belongs to the citrate synthase family. | 0.868 |
Sden_1750 | fumC | Sden_1750 | Sden_1650 | Aminotransferase. | Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.864 |
Sden_1750 | mdh | Sden_1750 | Sden_0826 | Aminotransferase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. | 0.930 |
Sden_1750 | pckA | Sden_1750 | Sden_0117 | Aminotransferase. | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.861 |
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