Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_1024Nucleoside-specific channel-forming protein, Tsx. (295 aa)    
Predicted Functional Partners:
Sden_0787
Biopolymer transport protein ExbD/TolR.
  
     0.730
Sden_2146
Conserved hypothetical protein.
  
     0.609
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.
     
 0.579
Sden_1023
Nucleoside transporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
  
  
 0.572
Sden_2341
Endonuclease/exonuclease/phosphatase.
  
     0.550
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
 
   
 0.511
Sden_2222
Protein of unknown function DUF1097.
  
     0.491
Sden_2415
FeoA.
  
     0.486
Sden_2124
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.481
Sden_2824
Major outer membrane lipoprotein, putative.
  
   
 0.475
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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