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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1069Hypothetical protein. (286 aa)    
Predicted Functional Partners:
Sden_1068
Hypothetical protein.
       0.773
Sden_1067
Male sterility-like protein.
 
     0.704
Sden_0963
MOSC domain protein.
  
 
 0.692
Sden_0524
MaoC-like dehydratase.
 
  
 0.676
Sden_1066
AMP-dependent synthetase and ligase.
 
     0.644
Sden_1065
Histidine triad (HIT) protein.
       0.565
Sden_2013
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
     0.495
Sden_0629
Hypothetical protein.
  
     0.494
Sden_1900
2,4-dienoyl-CoA reductase.
 
  
 0.489
fadB
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.488
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.