STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1652Serine/threonine protein kinase. (490 aa)    
Predicted Functional Partners:
Sden_3726
FHA domain protein.
   
 
 0.757
Sden_3713
Protein kinase.
  
 
 0.645
rnfA
Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.638
Sden_1508
Protein of unknown function UPF0153.
  
     0.599
Sden_1651
Conserved hypothetical protein; Belongs to the UPF0267 family.
 
     0.572
Sden_1653
Putative uracil-DNA glycosylase family protein.
       0.565
Sden_3153
Hypothetical protein.
  
 
 0.476
Sden_0538
Multi-sensor hybrid histidine kinase.
  
 
 0.471
Sden_2342
ATP-binding region, ATPase-like protein.
   
 
 0.466
Sden_3532
Amino acid adenylation.
  
  
 0.464
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.