Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_1663Transcriptional regulator, GntR family. (218 aa)    
Predicted Functional Partners:
prpB
2,3-dimethylmalate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.904
Sden_1667
Methylitaconate delta2-delta3-isomerase.
 
  
 0.724
Sden_2123
Acetolactate synthase, small subunit.
  
    0.703
Sden_1382
Transcriptional regulator, GntR family.
  
     0.687
prmB
Modification methylase, HemK family; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
    
   0.673
Sden_1665
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
  
 0.668
Sden_3384
Transcriptional regulator, GntR family.
 
  
 0.626
Sden_1666
Aconitase.
 
  
 0.584
Sden_1662
GGDEF domain.
       0.539
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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