STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1740Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (763 aa)    
Predicted Functional Partners:
Sden_2342
ATP-binding region, ATPase-like protein.
 
 
 0.821
Sden_3670
GGDEF domain.
 
 
0.818
Sden_1683
CHASE.
 
 
 0.755
Sden_0378
Diguanylate cyclase/phosphodiesterase / histidine kinase.
 
 
0.728
Sden_3352
Diguanylate cyclase/phosphodiesterase.
 
 
0.721
Sden_2120
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.707
Sden_3376
Diguanylate cyclase with PAS/PAC and GAF sensors.
 
 
0.704
Sden_1829
GGDEF domain.
 
 
0.698
Sden_0532
Diguanylate cyclase.
 
 
0.688
Sden_1996
GGDEF domain.
 
 
 
0.685
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.