STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1763Helix-turn-helix, HxlR type. (113 aa)    
Predicted Functional Partners:
Sden_2892
Putative NADH-flavin reductase.
  
  
 0.688
Sden_0763
Conserved hypothetical protein.
 
     0.653
Sden_1762
YCII-related.
       0.588
Sden_3746
Pirin-like protein; Belongs to the pirin family.
 
   
 0.438
Sden_2950
Pirin-like protein; Belongs to the pirin family.
 
   
 0.436
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.435
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.