Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Sden_1908Lipolytic enzyme, G-D-S-L. (267 aa)    
Predicted Functional Partners:
Sden_2999
Hypothetical protein.
  
 
 0.799
Sden_2366
Protein of unknown function DUF214.
   
   0.680
Sden_2367
ABC transporter related.
   
   0.680
Sden_3532
Amino acid adenylation.
     
 0.468
Sden_1907
Protein of unknown function DUF885.
       0.442
Sden_2659
WxcM-like protein.
 
   
 0.421
Sden_3371
Short-chain dehydrogenase/reductase SDR.
  
    0.413
Sden_2962
Carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.410
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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